Prevalence of human coronaviruses in adults with acute respiratory tract infections in Beijing, China
Identifieur interne : 000201 ( France/Analysis ); précédent : 000200; suivant : 000202Prevalence of human coronaviruses in adults with acute respiratory tract infections in Beijing, China
Auteurs : Lili Ren [République populaire de Chine] ; Richard Gonzalez [République populaire de Chine, France] ; Jin Xu [République populaire de Chine] ; Yan Xiao [République populaire de Chine] ; Yongjun Li [France] ; Hongli Zhou [République populaire de Chine] ; Jianguo Li [République populaire de Chine] ; Qingqing Yang [République populaire de Chine] ; Jing Zhang [République populaire de Chine] ; Lan Chen [République populaire de Chine] ; Wei Wang [République populaire de Chine] ; Guy Vernet [France] ; Gláucia Paranhos-Baccalà [France] ; Zhong Wang [République populaire de Chine] ; Jianwei Wang [République populaire de Chine]Source :
- Journal of Medical Virology [ 0146-6615 ] ; 2011-02.
English descriptors
- Teeft :
- Adult patients, Alignment analysis, Beijing, Chinese academy, Clin, Clin microbiol, Clinical presentations, Clinical specimens, College hospital, Coronavirus, Coronavirus hku1, Coronavirus infection, Coronaviruses, Detection rate, Detection rates, Different hcov infections, Different hcovs, Dongcheng district, Elderly adults, Genbank accession numbers, Grant sponsor, Hcov, Hcov infection, Hcov infections, Hcov strains, Hcovs, Highest rates, Hku1, Hong kong, Human coronavirus, Human coronavirus infection, Human coronaviruses, Immunocompromised adults, Infection, Laboratory investigations, Leukocyte count, Maximum body temperature, Microbiol, Molecular techniques, Muscle pain, Nasopharyngeal aspirates, Novel coronavirus, Novel hcovs, Nucleotide sequences, Other studies, Other viruses, Other year, Pathogen biology, Peking union, Peripheral blood tests, Phylogenetic, Phylogenetic analysis, Polymerase chain reaction, Positive cases, Positive infection, Previous reports, Previous studies, Proc natl acad, Pulmonary disease, Reference sequences, Respiratory disease, Respiratory syndrome, Respiratory tract infections, Respiratory viruses, Study period, Study reports, Throat swabs, Total samples, Tract infection, Tract infections, Various hcovs, Viral transport medium, Virol, Virus type, Winter season.
Abstract
Human coronaviruses (HCoVs) are a common etiological agent of acute respiratory tract infections. HCoV infections, especially those caused by the two HCoVs identified most recently, NL63 and HKU‐1, have not been characterized fully. To evaluate the prevalence and clinical presentations of HKU1 and NL63 in adults with acute respiratory tract infections, an investigation of HCoV infections in Beijing, China from 2005 to 2009 was performed by using reverse transcriptase PCR assays and sequencing analysis. Among 8,396 respiratory specimens studied, 87 (1%) clinical samples were positive for HCoVs, of which 50 samples (0.6% of the total) were positive for HCoV‐OC43, 15 (0.2%) for HCoV‐229E, 14 (0.2%) for HCoV‐HKU1, and 8 (0.1%) for HCoV‐NL63. The prevalence of HCoV infection in adults exhibited distinct seasonal fluctuations during the study period. In addition, patients positive for HCoV‐229E infections were more likely to be co‐infected with other respiratory viruses. Enterovirus, rhinovirus, and parainfluenza virus type 3 were the most common viruses found in patients with HCoV infections. The demographic and clinical data present in this study of HCoV infections in adults with acute respiratory tract infections should improve our understanding of the pathogenesis of HCoVs. J. Med. Virol. 83:291–297, 2011. © 2010 Wiley‐Liss, Inc.
Url:
DOI: 10.1002/jmv.21956
Affiliations:
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xml:lang="fr">France</country><wicri:regionArea>Fondation Mérieux, Lyon</wicri:regionArea><placeName><region type="region">Auvergne-Rhône-Alpes</region><region type="old region">Rhône-Alpes</region><settlement type="city">Lyon</settlement></placeName></affiliation></author><author><name sortKey="Paranhos Accala, Glaucia" sort="Paranhos Accala, Glaucia" uniqKey="Paranhos Accala G" first="Gláucia" last="Paranhos-Baccalà">Gláucia Paranhos-Baccalà</name><affiliation wicri:level="3"><country xml:lang="fr">France</country><wicri:regionArea>Fondation Mérieux, Lyon</wicri:regionArea><placeName><region type="region">Auvergne-Rhône-Alpes</region><region type="old region">Rhône-Alpes</region><settlement type="city">Lyon</settlement></placeName></affiliation></author><author><name sortKey="Wang, Zhong" sort="Wang, Zhong" uniqKey="Wang Z" first="Zhong" last="Wang">Zhong Wang</name><affiliation wicri:level="3"><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Molecular Virology and Genetic Engineering and Dr. Christophe Mérieux Laboratory, IPB, CAMS‐Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="3"><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Peking Union Medical College Hospital, CAMS, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation></affiliation><affiliation wicri:level="1"><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Zhong Wang, 1# Shuai Fu Yuan, Dongcheng District, Beijing 100730, China.===Jianwei Wang, 9# Dong Dan San Tiao, Dongcheng District, Beijing 100730</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Jianwei" sort="Wang, Jianwei" uniqKey="Wang J" first="Jianwei" last="Wang">Jianwei Wang</name><affiliation wicri:level="3"><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Molecular Virology and Genetic Engineering and Dr. Christophe Mérieux Laboratory, IPB, CAMS‐Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><country wicri:rule="url">République populaire de Chine</country></affiliation><affiliation wicri:level="1"><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Zhong Wang, 1# Shuai Fu Yuan, Dongcheng District, Beijing 100730, China.===Jianwei Wang, 9# Dong Dan San Tiao, Dongcheng District, Beijing 100730</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><monogr></monogr><series><title level="j" type="main">Journal of Medical Virology</title><title level="j" type="alt">JOURNAL OF MEDICAL VIROLOGY</title><idno type="ISSN">0146-6615</idno><idno type="eISSN">1096-9071</idno><imprint><biblScope unit="vol">83</biblScope><biblScope unit="issue">2</biblScope><biblScope unit="page" from="291">291</biblScope><biblScope unit="page" to="297">297</biblScope><biblScope unit="page-count">7</biblScope><publisher>Wiley Subscription Services, Inc., A Wiley Company</publisher><pubPlace>Hoboken</pubPlace><date type="published" when="2011-02">2011-02</date></imprint><idno type="ISSN">0146-6615</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0146-6615</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="Teeft" xml:lang="en"><term>Adult patients</term><term>Alignment analysis</term><term>Beijing</term><term>Chinese academy</term><term>Clin</term><term>Clin microbiol</term><term>Clinical presentations</term><term>Clinical specimens</term><term>College hospital</term><term>Coronavirus</term><term>Coronavirus hku1</term><term>Coronavirus infection</term><term>Coronaviruses</term><term>Detection rate</term><term>Detection rates</term><term>Different hcov infections</term><term>Different hcovs</term><term>Dongcheng district</term><term>Elderly adults</term><term>Genbank accession numbers</term><term>Grant sponsor</term><term>Hcov</term><term>Hcov infection</term><term>Hcov infections</term><term>Hcov strains</term><term>Hcovs</term><term>Highest rates</term><term>Hku1</term><term>Hong kong</term><term>Human coronavirus</term><term>Human coronavirus infection</term><term>Human coronaviruses</term><term>Immunocompromised adults</term><term>Infection</term><term>Laboratory investigations</term><term>Leukocyte count</term><term>Maximum body temperature</term><term>Microbiol</term><term>Molecular techniques</term><term>Muscle pain</term><term>Nasopharyngeal aspirates</term><term>Novel coronavirus</term><term>Novel hcovs</term><term>Nucleotide sequences</term><term>Other studies</term><term>Other viruses</term><term>Other year</term><term>Pathogen biology</term><term>Peking union</term><term>Peripheral blood tests</term><term>Phylogenetic</term><term>Phylogenetic analysis</term><term>Polymerase chain reaction</term><term>Positive cases</term><term>Positive infection</term><term>Previous reports</term><term>Previous studies</term><term>Proc natl acad</term><term>Pulmonary disease</term><term>Reference sequences</term><term>Respiratory disease</term><term>Respiratory syndrome</term><term>Respiratory tract infections</term><term>Respiratory viruses</term><term>Study period</term><term>Study reports</term><term>Throat swabs</term><term>Total samples</term><term>Tract infection</term><term>Tract infections</term><term>Various hcovs</term><term>Viral transport medium</term><term>Virol</term><term>Virus type</term><term>Winter season</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Human coronaviruses (HCoVs) are a common etiological agent of acute respiratory tract infections. HCoV infections, especially those caused by the two HCoVs identified most recently, NL63 and HKU‐1, have not been characterized fully. To evaluate the prevalence and clinical presentations of HKU1 and NL63 in adults with acute respiratory tract infections, an investigation of HCoV infections in Beijing, China from 2005 to 2009 was performed by using reverse transcriptase PCR assays and sequencing analysis. Among 8,396 respiratory specimens studied, 87 (1%) clinical samples were positive for HCoVs, of which 50 samples (0.6% of the total) were positive for HCoV‐OC43, 15 (0.2%) for HCoV‐229E, 14 (0.2%) for HCoV‐HKU1, and 8 (0.1%) for HCoV‐NL63. The prevalence of HCoV infection in adults exhibited distinct seasonal fluctuations during the study period. In addition, patients positive for HCoV‐229E infections were more likely to be co‐infected with other respiratory viruses. Enterovirus, rhinovirus, and parainfluenza virus type 3 were the most common viruses found in patients with HCoV infections. The demographic and clinical data present in this study of HCoV infections in adults with acute respiratory tract infections should improve our understanding of the pathogenesis of HCoVs. J. Med. Virol. 83:291–297, 2011. © 2010 Wiley‐Liss, Inc.</div></front></TEI><affiliations><list><country><li>France</li><li>République populaire de Chine</li></country><region><li>Auvergne-Rhône-Alpes</li><li>Rhône-Alpes</li></region><settlement><li>Lyon</li><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Ren, Lili" sort="Ren, Lili" uniqKey="Ren L" first="Lili" last="Ren">Lili Ren</name></noRegion><name sortKey="Chen, Lan" sort="Chen, Lan" uniqKey="Chen L" first="Lan" last="Chen">Lan Chen</name><name sortKey="Gonzalez, Richard" sort="Gonzalez, Richard" uniqKey="Gonzalez R" first="Richard" last="Gonzalez">Richard Gonzalez</name><name sortKey="Li, Jianguo" sort="Li, Jianguo" uniqKey="Li J" first="Jianguo" last="Li">Jianguo Li</name><name sortKey="Wang, Jianwei" sort="Wang, Jianwei" uniqKey="Wang J" first="Jianwei" last="Wang">Jianwei Wang</name><name sortKey="Wang, Jianwei" sort="Wang, Jianwei" uniqKey="Wang J" first="Jianwei" last="Wang">Jianwei Wang</name><name sortKey="Wang, Jianwei" sort="Wang, Jianwei" uniqKey="Wang J" first="Jianwei" last="Wang">Jianwei Wang</name><name sortKey="Wang, Wei" sort="Wang, Wei" uniqKey="Wang W" first="Wei" last="Wang">Wei Wang</name><name sortKey="Wang, Zhong" sort="Wang, Zhong" uniqKey="Wang Z" first="Zhong" last="Wang">Zhong Wang</name><name sortKey="Wang, Zhong" sort="Wang, Zhong" uniqKey="Wang Z" first="Zhong" last="Wang">Zhong Wang</name><name sortKey="Wang, Zhong" sort="Wang, Zhong" uniqKey="Wang Z" first="Zhong" last="Wang">Zhong Wang</name><name sortKey="Xiao, Yan" sort="Xiao, Yan" uniqKey="Xiao Y" first="Yan" last="Xiao">Yan Xiao</name><name sortKey="Xu, Jin" sort="Xu, Jin" uniqKey="Xu J" first="Jin" last="Xu">Jin Xu</name><name sortKey="Yang, Qingqing" sort="Yang, Qingqing" uniqKey="Yang Q" first="Qingqing" last="Yang">Qingqing Yang</name><name sortKey="Zhang, Jing" sort="Zhang, Jing" uniqKey="Zhang J" first="Jing" last="Zhang">Jing Zhang</name><name sortKey="Zhou, Hongli" sort="Zhou, Hongli" uniqKey="Zhou H" first="Hongli" last="Zhou">Hongli Zhou</name></country><country name="France"><region name="Auvergne-Rhône-Alpes"><name sortKey="Gonzalez, Richard" sort="Gonzalez, Richard" uniqKey="Gonzalez R" first="Richard" last="Gonzalez">Richard Gonzalez</name></region><name sortKey="Li, Yongjun" sort="Li, Yongjun" uniqKey="Li Y" first="Yongjun" last="Li">Yongjun Li</name><name sortKey="Paranhos Accala, Glaucia" sort="Paranhos Accala, Glaucia" uniqKey="Paranhos Accala G" first="Gláucia" last="Paranhos-Baccalà">Gláucia Paranhos-Baccalà</name><name sortKey="Vernet, Guy" sort="Vernet, Guy" uniqKey="Vernet G" first="Guy" last="Vernet">Guy Vernet</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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